Mina Heinein
AI & Digital Health engineer. I research biomedical AI and build the software around it.
M.Sc. (M2) AI & Digital Health, Université PSL — from Sept 2026
B.Sc. Systems & Biomedical Engineering, Cairo University
Looking for an M2 research internship and a student job in Paris, France in medical AI or software engineering. Based in Paris from September 2026; French B2, English IELTS 8.0.
Publications
MedHyperGraph: EHR-Integrated Multimodal Hyperedges for Clinical VQA
2026
M. Heinein, M. Youssef, K. Nashed, T. Basha, H. M. T. Alam, A. M. Selim, O. S. Bhatti, D. Sonntag
- MICCAI 2026, MSB EMERGE Workshop — ORAL Graduation thesis, in collaboration with DFKI; funded by ASRT & ITIDA.
- Patient-specific multimodal hypergraphs for medical visual question answering, unifying structured EHR events, prior-report entities, cross-modal grounding, SNOMED CT ontology concepts, and image regions in one temporally indexed structure.
- Temporally-aware multimodal retrieval with leakage control, scoring evidence by textual, visual, temporal, and hypergraph proximity to build compact evidence subgraphs for VLM answer generation.
- 73.95% accuracy on the EHRXQA benchmark (95% CI 71.93–75.87), beating an RL-trained state of the art (70.43%) without task-specific training; +10.0 open-ended weighted-F1 at 27B, and multi-study F1 from 5.2 to 43.4.
- Paper · Code · Demo video
LocSAM3: Box-Supervised Adaptation of SAM3 for Text-Only Chest X-Ray Segmentation
2026
K. Nashed, M. Heinein, M. Youssef, T. Basha, H. M. T. Alam, A. M. Selim, O. S. Bhatti, D. Sonntag
- MICCAI 2026, MSB EMERGE Workshop — ORAL Graduation thesis, in collaboration with DFKI; funded by ASRT & ITIDA.
- Adapts SAM3's concept grounding using only bounding boxes and concept names — no pixel masks. The mask decoder and over 95% of the vision backbone stay frozen.
- On a 10-class MIMIC-CXR benchmark, text-only mIoU improves over Medical-SAM3 from 0.48 to 0.69 for anatomical structures and from 0.09 to 0.53 for pathological findings.
- Paper · Code & supplementary
Education
M.Sc. (M2) in AI and Digital Health (ST4Health) — Université PSL
2026–2027
Paris, France
B.Sc. in Systems & Biomedical Engineering — Cairo University
2021–2026
Cairo, Egypt
- Relevant coursework: Machine Learning, Deep Learning, Computer Vision, Medical Imaging, Data Structures, Algorithms, Object-Oriented Programming, Digital Signal Processing, Embedded Systems, Computer Architecture, Biomedical Instrumentation.
Experience
Software Engineering Intern — EJADA
Aug–Sep 2025
- Built CRM solutions on Microsoft Dynamics 365 with retail and corporate customer portals, implementing field specifications, form layouts, and validation rules for contact and account management.
- Developed REST and SOAP web services for case data retrieval, created web resources for dashboard integration, and implemented custom .NET plugins and automated business rule enforcement.
- Created an end-to-end case management workflow with automated routing rules, status tracking, SLA implementation, and email notifications, supporting multiple case types including credit card operations.
Web Development Intern — NAID
Jul–Sep 2024
- Developed dynamic web applications, integrating assistive technology for enhanced accessibility.
- Worked across web development, IoT, and assistive technology, focused on users with mobility, sensory, or cognitive challenges.
Selected projects
SignalSuite Toolkit
Python · PyQt5
- Multi-port signal viewer: real-time ECG/EEG analyzer with automated reporting.
- Signal equalizer: vocal extraction, animal/music sound separation, Wiener noise filtering, real-time frequency manipulation, dynamic spectrograms.
- Shazam-style audio fingerprinting using similarity matching for music identification.
- Repository — built with a team of five.
Eduokee
React · Node · Spotify API
- Language learning through song lyrics. Integrated the Spotify API for login, playlist access, and playback, increasing user engagement by 45%.
- Scored singing accuracy in real time using Google Cloud Speech and Levenshtein distance; clickable lyrics give instant dictionary definitions.
- Repository
AVR-Based Smart Home System
Embedded C · ATmega32 · ESP32
- Bare-metal driver development for LCD, DIO, interrupts, and UART; ESP32 for Wi-Fi, enabling remote monitoring and control from a web interface.
- Repository
Computer Vision Toolkit
Python · OpenCV
- Classical computer vision from first principles: histogram equalisation, spatial and frequency filtering, thresholding, Sobel/Canny/active-contour edge detection, Harris and SIFT detection and matching, K-means/region-growing/Otsu segmentation, and a face recognition pipeline.
Chess Game
Java · Swing
- Complete rules engine — legal move generation, check and checkmate detection, castling, en-passant, promotion — with a Swing GUI, move history, and per-player timers.
- Repository
Courses and certifications
ALX Software Engineering Programme — front-end specialisation
Nov 2024
- Twelve-month project-based curriculum across programming languages, data structures, and algorithms; systems engineering and DevOps, Nginx configuration, and load balancing.
ITI Embedded Systems Diploma
Aug 2024
- Microcontroller interfacing and real-time operating systems; coursework in C programming, embedded system architecture, and automotive bus technology.
Technical skills
- Languages
- C, Python, Java, JavaScript, Bash
- AI / ML
- PyTorch, RAG & GraphRAG, knowledge graphs and hypergraphs, vision-language models, LLM-based evaluation, ontologies (SNOMED CT)
- Frameworks
- .NET, React, Node.js, NestJS, Flask
- Libraries
- OpenCV, NumPy, Pandas, Matplotlib, OpenGL
- Databases
- MongoDB, MySQL, PostgreSQL, Neo4j
- Tools
- Microsoft Dynamics 365, Linux, Git, Qt, SOAP & REST APIs
- Embedded
- AVR (ATmega32), ARM (STM32)
Languages
- English
- IELTS Academic Band 8.0
- French
- B2
- Arabic
- Native
Other
- Presented work on computational modelling of the neuromuscular junction in myasthenia gravis at Research Days.
- Designed and delivered a weekly Sunday school lesson programme for a class of young children.